It could be a lemmy federation issue. Can you message which comment it was? Sometimes federation is wonky by nature unfortunately.
this post was submitted on 03 Jan 2024
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Just dm'd a link to the comment
It appears that it has federated now, but I do think it is likely due to the version issues. There's a multitude of bugs with lemmy, but due to the nature of federation deletion is always going to be a bit wonky regardless unfortunately. Keeping an eye on the development of lemmy, but the newest update has been a hot mess.