I always hated this plot line in these movies. No one has any empathy for the struggles Rogue is going though. Everyone else can be both a living weapon and have a normal life, but Rogue has to choose. If you wanted to framed this as trans metaphor, everyone else looks like a bunch of bigots. Honestly, the more and more you breakdown what Xavier is doing, the more and more he just looks like a different kind of villain. Seriously, how many of the mutants powers ever get explored for non-combat reasons? If this was just about adults, it'd be one thing, but this guy is in charge of children who are being kept away from their parents.
But nope, in Storm's eyes, Rogue is perfect just the way she is. As a living weapon.
I think this may have been were I started thinking there's something wrong with Hollywood and comic book writers.