Pillars of Eternity 2 for me. Had TONS of pages of notes of build ideas, locations, treasures, remembering to go to X at Y level, etc... Absolutely had a blast with that game.
Gaming
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Mostly old point and click games like Sierra and Lucasarts things. Stuff where you can easily softlock yourself with 1 simple mistake.
I play Ocarina of Time randomizers using both a tracker and my own notes. That game is pretty huge, especially when things are shuffled around.
Pretty much any 90s point and click adventure game made by Lucas arts, Sierra etc. No objective marker, no journal, you just wander around clicking things trying to mash items together. “Where did I see that symbol before?? flips through notebook Oh right!”
Welcome to my favorite genre of game!
As they've already been mentioned before, I will second both La-Mulana (and though not mentioned, it's sequel), and FEZ.
The Witness didn't make me break out Pen and Paper, but it was definitely one I had to give my brain a break and come back to to look at things from a fresh angle.
Now for some previously unmentioned finds where your attention to detail will be rewarded. Not all will require notebooks. But there puzzles hidden in all of them.
Environmental Station Alpha is a Metroidvania.
Full Metal Furies is a side-scrolling beat-em up.
INSIDE is a side-scrolling platformer.
Inscryption is a deck-builder / puzzle room.
Since you already said Tunic, I'll throw out Riven: The Sequel to Myst
I played it several months ago for the first time and my desk was completely littered with sticky notes, most of which would have been incomprehensible to anyone else
Tunic is a BIG one. The language puzzles, and the math puzzles. SO MANY NOTES.
Wasteland 2.
There's a couple of places that need passcodes and figuring out riddles. Sometimes you team is smart enough to remember them, other times not so much.
It also comes in handy with Dialog Options when no one in your team has 'talking' as a primary stat. You can still punch in the triggering word manually.
You're basically the sixth member of the team if you can remember all that stuff. It's neat little feature. Pen and paper absolutely required.
I did the same for wasteland 3~! Had a bunch of pages of notes trying to remember where to come back to, etc... Love it!