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I am running a VM on Gnome Boxes on a laptop with Intel® Core™ Ultra 7 155H Processor and integrated graphics. I am able to run the VM without 3D acceleration with no problem, but whenever I turn it on, the VM's display malfunctions. I tried it with EndeavourOS, CachyOS and Fedora 41, all have 3D acceleration issue.
If all have problems, then it's something that likely can't really be fixed via the forum. It's either a bug, or a not-fully featured feature yet. Qemu often has 3D problems anyway when enabled. 3D is a really hard problem to get right. Stay with 2D acceleration, or try the latest VMWare to see if you can use 3D with it instead. Otherwise, install on bare metal.
I'm unable to help with this but am curious: how are you finding the ultra 7 on Fedora in general? And have you been able to make use of NPU?
I haven't installed Fedora 41 on my system. I ran it on the VM and also I ran it of a live USB on my bare metal. It runs smoothly on the system. Gestures, speakers, sleep, everything seems to be working. But I did found that there were some weird lines on the display sometimes, when displaying lists (like in the list of processes in the system monitor). I noticed it on the VM also. But nothing major and it only happened once or twice.
I ran F41 Gnome.