I had the same issue with the MX Master 3S. It's caused by the hi-res scroll wheel feature of Logitech's HID++. If you have a Bolt dongle, try using that instead of Bluetooth.
If that's not a fix, try blacklisting the hid-logitech-hidpp
kernel module.
Arch wiki article about module blacklisting: https://wiki.archlinux.org/title/Kernel_module#Blacklisting
About kernel parameters in GRUB (should be the default bootloader in Bazzite): https://wiki.archlinux.org/title/Kernel_parameters#GRUB
The easiest way to do it in GRUB is to:
- open the
/etc/default/grub
file with root privileges - find the line starting with
GRUB_CMDLINE_LINUX_DEFAULT=...
- insert
module_blacklist=hid-logitech-hidpp
to the end separated by a single space - save the file
- run
grub2-mkconfig -o /boot/grub2/grub.cfg
as root to apply the changes - reboot
This will prevent loading the HID++ module entirely. The OS then shouldn't be able to interpret high-res scroll events. You'll also have to enable or disable the scroll wheel resolution in Solaar to handle it properly.
(edit) tested in a Bazzite VM and updated the steps.